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Surgical pathologists who evaluate specimens from the gastrointestinal (GI) tract for possible infections must first attempt to differentiate histologic changes suggesting infection from other inflammatory processes. After this determination, dedicated attempts must be made to diagnose the specific infectious organisms. The surgical pathologist’s ability to detect infectious processes in tissue sections has grown exponentially with the advent of new histochemical and immunohistochemical stains, in situ hybridization, and polymerase chain reaction (PCR) analysis. Of note, multiplexed PCR assays performed on stool samples have become widely available and are slowly replacing traditional stool culture for identification of causative bacterial and viral pathogens in many centers. Use of these techniques has resulted in an increase in our knowledge of the pathologic features of specific infections.
Most GI infections are self-limited. Patients who undergo endoscopic evaluation and biopsy generally have unusual clinical features such as debilitating diarrhea, evidence of systemic disease, or a history of immunocompromise. One of the most valuable (and least expensive) diagnostic aids for a surgical pathologist is a discussion with the gastroenterologist regarding specific symptoms, colonoscopic findings, travel history, food intake history (e.g., sushi, poorly cooked beef), sexual practices, and immune status.
A wide variety of viruses affect the GI tract. Manifestations of disease vary with the type of virus, specific site of infection, and immune status of the patient.
Cytomegalovirus (CMV) infection occurs in both immunocompromised and immunocompetent persons and may be found throughout the GI tract. The pathogenesis in truly healthy patients is poorly understood. An underlying immunocompromised state should be considered when CMV infection is diagnosed because it is an opportunistic pathogen in patients with many conditions that compromise immunity, including those with acquired immunodeficiency syndrome (AIDS) or solid organ or bone marrow transplant recipients, as well those who receive prolonged immunomodulator or steroid therapy for immune-mediated or autoimmune disorders.
Symptoms vary with the immune status of the patient and the specific site of infection. In immunocompromised individuals, CMV esophagitis causes odynophagia, whereas gastroenteritis is marked by abdominal pain, diarrhea (either bloody or watery), fever, and weight loss. Hypertrophic gastropathy with protein-losing enteropathy resembling Menetrier’s disease has rarely been reported in association with CMV gastritis. Primary infections in healthy, immunocompetent persons are often self-limited. CMV superinfection is known to exacerbate other chronic GI diseases, such as ulcerative colitis and Crohn’s disease; in such cases, it is associated with toxic megacolon, refractoriness to medical therapy, and high mortality.
Viral infection
Anywhere in the gastrointestinal tract
Most common in, but not limited to, immunocompromised patients
Odynophagia, diarrhea (with or without blood), abdominal pain, fever, weight loss
May cause an ischemic picture, both clinically and pathologically
May be reactivated in Crohn’s disease or ulcerative colitis after immunosuppressive therapy
Infections in healthy persons are usually self-limiting
Ganciclovir often in combination with newer drugs
Cytomegalovirus causes a wide variety of gross lesions with ulcers being the most common finding ( Fig. 9.1 ); they may be single or multiple and either superficial or deep. The ulcers often have a well-demarcated, “punched-out” appearance. Other gross findings include hemorrhagic colitis, pseudomembranous colitis, and obstructive mass lesions.
Segmental colonic involvement with linear ulcers mimicking Crohn’s disease have been well documented in colonic CMV infection. Rarely, severe ulcerative CMV infection may lead to bowel perforation.
The histologic spectrum of CMV infection also varies widely, often depending on the patient’s immune status. Typical histologic features include mixed inflammation with numerous neutrophils and mucosal ulceration with prominent granulation tissue. Epithelial cell apoptosis may be prominent ( Fig. 9.2A ). Virtually no associated inflammatory reaction may be seen in severely immunocompromised patients. Inclusions are preferentially found in endothelial cells and stromal cells and only rarely in epithelial cells; thus, they are usually seen deep in ulcer bases.
The characteristic “owl’s eye” intranuclear inclusions are visible on routine (hematoxylin and eosin) preparations, as are brightly eosinophilic, granular intracytoplasmic inclusions ( Fig. 9.2B ). Occasionally, CMV infection of endothelial cells of mucosal and submucosal vessels of the bowel initiates inflammatory mediators, leading to vascular thrombosis and subsequent bowel ischemia. Segmental bowel ischemia caused by infection with CMV shows histologic features that are similar to other causes of ischemia (hemorrhagic necrosis and crypt withering). In addition to CMV inclusions, the vessels may show marked inflammation and necrosis.
Most commonly ulcers, single or multiple, shallow or deep
May also manifest as colitis (hemorrhagic or pseudomembranous) or obstructive mass
Segmental or linear ulceration may mimic Crohn’s disease grossly
Characteristic inclusions: “owl’s eye” inclusions in the nuclei of endothelial and stromal cells
Granular eosinophilic inclusions in the cytoplasm of endothelial and stromal cells
Mixed inflammation with prominent neutrophils and apoptosis
No associated inflammatory reaction may be seen, particularly in severely immunocompromised patients
Endothelial infection may cause ischemia
Other viral infections, particularly adenovirus
Crohn’s disease
Graft-versus-host disease
Ischemic colitis
Examination of multiple levels and immunohistochemical stains facilitates detection of rare CMV inclusions in cases when clinical suspicion is high but characteristic findings are lacking or when exuberant inflammation obscures diagnostic features, such as in samples from patients with corticosteroid-dependent IBD. Detection of isolated CMV-positive cells may be of clinical import for patients with GI complaints because some experience symptomatic improvement with antiviral therapy. Findings on immunohistochemical stains should always be correlated with routine sections because granulocytes and plasma cells may show nonspecific staining. Other useful diagnostic aids include viral culture, PCR assays, and in situ hybridization. Isolation of CMV in culture, however, does not imply active infection because virus may be excreted for months to years after a primary infection. Similarly, positive serologic studies may indicate prior or primary infection.
The differential diagnoses are primarily other viral infections, particularly adenovirus. CMV inclusions and are present within both the nucleus and cytoplasm. Adenovirus inclusions, by comparison, are crescent shaped or have irregular outlines, are generally within surface epithelium, and are only intranuclear. The distinction between CMV infection and graft-versus-host disease (GVHD) in bone marrow transplant patients may be particularly difficult because both clinical and histologic features are similar. Immunohistochemistry (IHC) may be used to rule out CMV infection in this setting. As mentioned previously, CMV infection may produce architectural distortion, deep “fissuring” ulcers, and skip lesions that simulate Crohn disease but does not produce neural hyperplasia, transmural lymphoid aggregates, muscularis mucosae hypertrophy, or pyloric metaplasia. Of course, a careful search for inclusions should confirm the diagnosis of CMV infection in cases with features of both disorders (although the two may coincide; Fig. 9.3 ).
The vast majority of infections in healthy persons are self-limiting. Ganciclovir has historically been the mainstay of medical therapy, but this drug has problems with toxicity and poor oral bioavailability, and resistant strains are evolving. Newer drugs such as foscarnet are now often used in combination with ganciclovir.
Herpetic infection is most commonly seen in the esophagus and anorectum. The symptoms and pathologic features of herpes simplex virus type 1 (HSV-1) versus HSV-2 are indistinguishable. Herpetic proctitis is the most common cause of nongonococcal proctitis in homosexual men. In immunocompetent patients, herpes outbreaks are often self-limiting; immunocompromised persons may be at risk for dissemination and life-threatening illness.
Herpetic esophagitis causes dysphagia, vomiting, and hematemesis. Proctitis presents with severe anorectal pain, bloody discharge or frank bleeding, tenesmus, constipation, and fever. Concomitant neurologic symptoms (difficulty in urination and paresthesias of the buttocks and upper thighs) are well described, as is inguinal lymphadenopathy. Herpes colitis is most often seen in immunocompromised patients and may be a fulminant, life-threatening condition.
Viral infection, often in immunocompromised patients
Predominantly esophageal and anorectal; rarely colonic
Most common cause of nongonococcal proctitis in homosexual men
Most common in, but not limited to, immunocompromised patients
Esophagitis: dysphagia, vomiting, hematemesis
Proctitis: anorectal pain, discharge, often with neurologic symptoms, and inguinal lymphadenopathy; perianal vesicles
Colitis: diarrhea, lower gastrointestinal bleeding; fulminant colitis with perforation may develop
Acyclovir is first line of medical therapy; surgery may be required if fulminant colitis or perforation develops
Ulcers are the most common findings in the esophagus, but one may also see intact vesicles. Severe cases may be characterized by diffuse erosive esophagitis. In herpetic proctitis, perianal vesicles are common, and they may extend into the anal canal and rectum. In herpetic colitis, the most typical finding is multiple and confluent ulcers. The surrounding mucosa is often hemorrhagic and friable, and “cobblestoning” of the mucosa may be seen.
Ulcers are associated with increased neutrophils in the lamina propria, and perivascular lymphocytic cuffing. The inflammatory exudate often contains sloughed epithelial cells. Two types of characteristic nuclear inclusions may be found: (1) the more common smudged, ground-glass nuclear inclusion with peripheral darker, marginated chromatin ( Fig. 9.4 ), and (2) the acidophilic inclusions with a surrounding clear halo and peripheral chromatin margination (Cowdry type A inclusion). They are usually present in squamous epithelial cells at the edges of ulcers and are often multiple.
Fewer than half of biopsy specimens contain inclusions. Viral culture is the most valuable aid to diagnosis; IHC, in situ hybridization, and PCR assays may also be of use.
Ulcers, vesicles
Mucosal friability and hemorrhage, “cobblestoned” mucosa in the colon
Ulceration, inflammatory exudate with sloughed epithelial cells
Viral inclusions in epithelial cells, consisting of a smudged, ground-glass nucleus with peripheral darker, marginated chromatin
Other viral infections, particularly varicella
Crohn’s disease
The differential diagnosis predominantly includes other viral infections, such as CMV and varicella zoster (VZV). Morphology and location of the inclusions distinguishes HSV from CMV. Herpetic inclusions are most often in the epithelial cells of the mucosa, whereas CMV preferentially involves the endothelial and stromal cells. Co-infection may also occur, particularly in the immunocompromised. Rarely, segmental ulceration and cobblestoning of mucosa may mimic Crohn’s disease, as in the case of CMV infection. Unlike CMV infection, HSV complicating idiopathic IBD is rare, and data are limited to case reports. Serologic studies play a limited role in the diagnosis of HSV colitis owing to the high prevalence of HSV seropositivity overall; IHC may be used when suspicion is raised on morphologic grounds. HSV may be detected in colonic tissue samples via PCR but is not routinely used. Varicella zoster inclusions are indistinguishable from HSV on H&E sections, but tend to be occur at all levels in infected mucosa, rather than in a superficial distribution. Patients often have a skin rash. VZV inclusions are negative on HSV immunostains; immunostains targeting VZV are available.
Acyclovir is the mainstay of medical therapy. Segmental resection to control bleeding and prevent perforation may be required in severe cases of herpetic colitis.
Adenovirus infection is second only to rotavirus as a cause of self-limiting childhood diarrhea. However, it has recently gained much attention as a cause of diarrhea in immunocompromised patients, especially those with AIDS and patients who have undergone transplantation (particularly bone marrow transplantation). Adenovirus infection of the GI tract is strongly associated with concomitant acute GVHD.
Virtually all patients present with diarrhea, sometimes accompanied by fever, weight loss, lower GI bleeding, and abdominal pain.
Endoscopic findings typically include erythematous, friable, and granular mucosa.
Histologic features of adenovirus infection include epithelial changes such as superficial cellular degeneration, apoptosis of epithelial cells, and focal acute inflammation. Severe cases may show ulceration and exudate. Characteristic homogeneous, smudgy, eosinophilic inclusions may be seen lining the nucleus. Adenovirus inclusions are, except in rare circumstances, limited to epithelial cells; inclusions are most common within surface epithelium but may also be seen in the crypt epithelium. Inclusions are particularly common in surface goblet cells, in which they are often crescent shaped ( Fig. 9.5 ).
Erythematous, friable, and granular mucosa
Superficial cellular degeneration, apoptosis of epithelial cells, and focal acute inflammation; severe cases may show ulceration and exudate
Inclusions
Homogeneous, smudgy, eosinophilic inclusions fill the nucleus.
Inclusions can be crescent shaped or targetoid
Most common within surface epithelium, particularly goblet cells, but can be seen in crypt epithelial cells; almost never in endothelial and mesenchymal cells
Other viral infections, particularly cytomegalovirus
Immunohistochemistry is useful aid for adenovirus detection.
The differential diagnosis primarily includes other viral infections, especially CMV. Morphologic differences between the two viruses, as well as differences in location within the gut (epithelium vs endothelium or stromal cells) usually help resolve the differential diagnosis. Because adenovirus often coexists with GVHD, it may be overlooked if a careful search for inclusions is not undertaken. Adenovirus inclusions also show morphologic overlap with reactive and degenerative nuclear changes in intestinal epithelia and may be easily overlooked; a high index of suspicion should be maintained in immunosuppressed populations.
The antiviral drug ribavirin is the mainstay of therapy.
Human immunodeficiency virus (HIV) has been implicated in the pathogenesis of chronic esophageal ulcers in infected patients, due, in part, to detection of viral proteins in ulcerated mucosa. The diagnosis is one of exclusion; thus, one should thoroughly evaluate other possibilities, including other viral infections and medication-induced injuries. Ulcers may contain atypical-appearing fibroblasts, and the associated squamous mucosa may be atrophic.
AIDS enterocolopathy is a term that describes morphologic changes seen in the gut of patients with HIV/AIDS and chronic diarrhea, for which no other infectious cause has been identified. Some argue that these changes represent either primary infection of gut epithelial cells with HIV or a secondary autoimmune reaction to viral infection. Others believe that this is a poorly understood term that does not clearly represent a specific disease entity and thus should not be used at all. The controversy arises because asymptomatic patients may have similar morphologic findings on biopsy, and conversely, severely symptomatic patients may have normal biopsy findings. In addition, there is always the added concern that a causative pathogen simply has been missed.
Patients with AIDS enterocolopathy often have chronic diarrhea, but some are asymptomatic. Colonoscopy is usually normal. The small bowel is more commonly affected than the colon. Histologic features include increased apoptotic activity ( Fig. 9.6 ) and decreased numbers of mitotic figures relative to extent of mucosal injury; the changes resemble those seen in mild GVHD and chemotherapy-related mucosal injuries. The differential diagnosis includes conditions that are associated with prominent apoptosis, such as GVHD, chemotherapy- and drug-related injury, and other viral infections Other infectious agents should be rigorously excluded.
A seemingly endless array of bacterial species are pathogenic in the GI tract. Many produce nonspecific changes, but others may be identified in tissue sections or produce inflammatory patterns that are suggestive of specific infections. This section covers major bacterial pathogens, emphasizing features that guide pathologists and clinicians in reaching a correct diagnosis.
Sarcina spp. are gram-positive cocci that may be found associated with ulcerated gastric mucosa. Severe complications for S. ventriculi infection are rare, and the organism is found in stool of healthy individuals; thus, its pathogenicity remains controversial.
Sarcina organisms are identified in patients with delayed gastric emptying and gastric outlet obstruction, often in the setting of an obstructing mass, stricture, or prior surgery. Clinical and imaging findings usually reveal an alternate explanation for gastric obstruction, raising the possibility that Sarcina organisms do not cause disease but are a marker of luminal stasis. Patients report epigastric pain, dyspepsia, bloating, and vomiting. Sarcina organisms have been implicated in rare cases of acute emphysematous gastritis.
Gram-positive anaerobic coccus that can grow in acidic environments
Stomach
Infection is rare
Nausea, vomiting
Abdominal pain
Melena, hematemesis
Emphysematous gastritis
Perforation
May be asymptomatic
History of prior gastric surgery
Presence of an obstructing mass
Metronidazole with or without other antibiotics
Relief of gastric outlet obstruction
Antiacid therapy
Endoscopic findings include retained food and bile, masses, gastritis, and ulcers.
Sarcina organisms do not invade the gastric mucosa and do not typically evoke an inflammatory response. This supports the notion that the organisms are not pathogenic; however, they may colonize preexisting ulcers, which increases the risk of perforation or emphysematous gastritis ( Fig. 9.7A ). They are spherical to cuboidal organisms that span 1.8 to 3 μm and have refractile cell walls, resembling vegetable matter ( Fig. 9.7B ). They occur in a “tetrad packet” arrangement of four organisms or multiples of four, reflecting cell division in multiple planes.
S. ventriculi can usually be diagnosed in routine sections, but tissue Gram stain may highlight the organisms. If necessary, PCR amplification of the 16 S rRNA gene can confirm the diagnosis.
Micrococcus spp. are also gram-positive cocci that occur in tetrads, but they are considerably smaller (0.5 μm) than S. ventriculi and are aerobes. Staphylococci are also gram positive but measure only 1 μm and occur in grapelike clusters rather than tetrads.
Therapy is aimed at eliminating the underlying cause of gastric outlet obstruction. Eradication of the organisms with metronidazole therapy in combination with other antibiotics has been reported. Some patients report symptomatic relief with proton pump inhibitors, H2 receptor blockers, and antiemetic therapy.
Whipple disease is a rare, multisystemic infectious disorder caused by the bacillus, Tropheryma whipplei (formerly T. whippelii ). The disease predominantly occurs in middle-aged white men; however, recent studies show increased incidence in women. It has historically shown a predilection for farmers and carpenters. Some point to detection of T. whipplei in asymptomatic individuals and familial cases as evidence of a possible genetic susceptibility to a commensal organism.
Whipple disease may affect virtually any organ system, but the classic presentation includes diarrhea, weight loss, fever, abdominal lymphadenopathy, and arthralgia. A substantial proportion of patients experience cardiovascular and pulmonary symptoms. The most severe form of disease includes neuropsychiatric manifestations, such as ophthalmoplegia, myoclonus, and dementia.
Gram-positive bacillus responsible for rare multisystem disorder characterized by diarrhea and malabsorption
Small intestine; rarely the esophagus stomach, colon, and mesenteric lymph nodes
Diarrhea, weight loss, abdominal lymphadenopathy
Fever
Arthralgias
Cardiac failure, pericarditis
Cough and pleuritic chest pain
Dementia and neuromuscular symptoms
Months to years of antibiotic therapy may be necessary
Supportive care for malabsorption
Relapse may occur
The duodenal mucosa may show thickened small intestinal folds that are coated with yellow-white plaques. The adjacent mucosa may appear erythematous or friable.
Whipple disease is most commonly diagnosed in duodenal biopsy specimens. Involvement of the liver, esophagus, stomach, colon, and mesenteric lymph nodes has also been documented. In small bowel biopsies, the villi are blunted by expansion of the lamina propria with foamy macrophages ( Fig. 9.8A ). In addition, there may be neutrophilic activity, fat vacuoles (small collections of extracellular lipid droplets), and lymphangiectasia. Foamy macrophages contain periodic acid–Schiff (PAS)–positive bacillary organisms ( Fig. 9.8B ).
Enlarged mucosal folds
Yellow-white plaques
Villous blunting
Foamy macrophages expand the lamina propria and submucosa
Periodic acid–Schiff–positive bacillary organisms within foamy macrophages
Neutrophilic infiltrates
Fat droplets and lymphangiectasia in the mucosa
Histoplasma capsulatum
Mycobacterium avium-intracellulare complex
The differential diagnosis includes other organisms that infect the mononuclear phagocytic system. Histoplasma capsulatum organisms are ovoid with a surrounding halo and stain with Gomori methenamine silver (GMS). Mycobacterium avium-intracellulare (MAI) are filamentous, pale blue intracellular organisms on H&E stain. They can be PAS positive but are distinguished from T. whipplei by positive staining with Ziehl-Neelsen or other acid-fast stains. Both of these infections may elicit granulomatous inflammation in immunocompetent hosts.
Culture of T. whipplei has met with limited success because of the organism’s slow growth and need for an acidic environment that simulates intracellular conditions. IHC is available to confirm this diagnosis. PCR assay is a highly sensitive and specific method to confirm this diagnosis in suspicious cases. Given the availability of IHC and PCR assays, electron microscopy is less commonly used for confirmation.
Diarrhea resulting from bacterial infection is a significant worldwide health problem. Escherichia coli and Salmonella, Shigella , and Campylobacter spp. are the most commonly identified pathogens. Many bacterial infections of the gut are related to ingestion of contaminated water or food or travel to countries where these organisms are endemic. Although bacteria are often recovered by culture or identified by molecular means, surgical pathologists may play a valuable role in diagnosis. A general classification of colonic bacterial infections by histologic pattern is given in Table 9.1 .
Minimal or No Inflammatory Change | Acute Self-Limited Colitis Pattern | Pseudomembranous Pattern | Predominantly Granulomatous | Diffuse Histiocytic | Predominantly Lymphohistiocytic | Marked Architectural Distortion | Ischemic Pattern |
---|---|---|---|---|---|---|---|
|
|
|
|
|
|
|
|
Despite the large number of infectious agents that may affect the colon, the histologic features that they produce may be generally categorized as follows:
Organisms producing very mild or no histologic changes (e.g., enteroadherent E. coli [EAEC])
Organisms producing the histologic features of acute infectious/self-limited colitis or focal active colitis, such as Campylobacter spp.
Organisms producing suggestive or diagnostic histologic features, such as pseudomembranes, granulomas, or ischemic changes
The pattern of acute self-limited colitis or focal active colitis is one of the most common seen in infectious colitis. Typical histologic features include cryptitis, with or without increased neutrophils in the lamina propria and crypt abscesses; preservation of crypt architecture; and lack of basal plasmacytosis. The acute inflammatory component may be most prominent in the mid to upper crypts. The lack of crypt distortion and basal lymphoplasmacytosis helps distinguish acute self-limited colitis from early IBD.
Diarrheagenic E. coli organisms are classified into five groups: enterotoxigenic, enteropathogenic, enteroadherent, enteroinvasive, and enterohemorrhagic. If pathogenic E. coli is suspected, the clinical laboratory should be notified to search for it specifically because cultures may be a valuable diagnostic aid.
Enterotoxigenic E. coli is a major cause of traveler’s diarrhea, but patients are seldom examined via biopsy, and the pathology has not been well characterized in humans. Enteropathogenic E. coli (EPEC) predominantly affects infants and neonates. Biopsy is not generally performed and is not diagnostically useful, although occasionally gram-negative rods may be seen at the surface of the mucosa ( Fig. 9.9 ). EAEC is similar to the enteropathogenic group and is also an important cause of traveler’s diarrhea and pediatric diarrhea worldwide. Both EPEC and EAEC have been increasingly recognized as causes of chronic diarrhea and wasting in AIDS patients. Endoscopic findings are usually unremarkable, but histologic examination shows a coating of adherent bacteria at the surface epithelium, which may stain gram negative. Degenerated surface epithelial cells with associated intraepithelial inflammatory cells may also be present. Enteroinvasive E. coli (EIEC) is similar to Shigella both genetically and in its clinical presentation and pathogenesis. Given its capacity for invasion, EIEC produces a severe dysentery-like diarrheal illness that can be a particular problem in patients with AIDS. The gross and microscopic pathology of EIEC has not been well described.
The most common strain of EHEC is 0157:H7. This infectious disease is probably markedly underdiagnosed. This organism adheres to intestinal epithelial cells and produces a cytotoxin similar to that produced by Shigella dysenteriae ; however, there is no invasion. Although contaminated meat is the most frequent mode of transmission, infection may also occur through contaminated water, milk, produce, and person-to-person contact.
Symptoms usually consist of bloody diarrhea with severe abdominal cramps and mild or no fever. Nonbloody, watery diarrhea may occur, however. Only one-third of patients have fecal leukocytes. Rarely, this infection leads to frank lower GI bleeding. Affected persons may develop hemolytic-uremic syndrome or thrombotic thrombocytopenic purpura, and children and older adults are at particular risk for serious, systemic illness.
Diarrheagenic Escherichia coli strain producing hemorrhagic colitis
Preferentially involves the right colon
Bloody diarrhea with severe abdominal cramps
Mild or no fever
Sometimes leads to obstructive edema or massive bleeding
Patients at risk for hemolytic-uremic syndrome and thrombotic thrombocytopenic purpura
Mainly supportive care
Role of antibiotics controversial
Surgery may be required to relieve obstruction or control bleeding
Endoscopically, patients have colonic edema, erosions, ulcers, and hemorrhage, and the right colon is usually more severely affected. The edema may be so marked as to cause obstruction.
The histopathologic features are those of ischemic colitis because the toxin is believed to induce an ischemic insult. These features include lamina propria and submucosal hemorrhage ( Fig. 9.10 ), with associated mucosal acute inflammation, crypt withering, and necrosis. Intimal thickening and luminal thrombi may be seen in small vessels, and pseudomembranes are occasionally present ( Fig. 9.11 ). Necrosis and hemorrhage of the superficial colonic crypts with sparing of the deeper compartment is characteristic of enterohemorrhagic E. coli but may also be seen in other types of ischemia. A combination of ischemic changes and features of acute colitis should raise suspicion for infection.
Colonic edema, erosions, ulcers, and hemorrhage
Mimics ischemic colitis of other causes
Microthrombi may be seen within small vessels
Pseudomembranes may be present
Ischemic colitis of other causes
Clostridioides difficile –related pseudomembranous colitis
Rarely, idiopathic inflammatory bowel disease
Examination of stool samples by PCR has recently become a crucial diagnostic aid. Routine stool cultures do not distinguish 0157:H7 from normal intestinal flora, and successful culture may be impossible more than 4 days after onset of symptoms. Microbiologic diagnosis requires screening on sorbitol–MacConkey agar and testing of colonies with antisera. An immunohistochemical stain for this organism is described, but is not used in clinical practice.
The differential diagnosis includes ischemic colitis, Clostridioides difficile –related colitis, and idiopathic IBD. Histologic features of ischemia in the right colon, particularly in patients who are not at risk for atherosclerotic disease, should prompt consideration of EHEC and the appropriate cultures. The histologic features of ischemia generally serve to distinguish EHEC from idiopathic IBD. If pseudomembranes are present, differentiation from C. difficile –related colitis may be difficult, and cultures or the C. difficile toxin assay may be required.
There is no proven therapy for EHEC, and the role of antibiotic treatment is controversial, although most strains are susceptible. Surgical resection of the affected colon may be required to relieve obstruction from edema or to control bleeding.
Salmonella , which are gram-negative bacilli, are transmitted through food and water and are particularly prevalent where sanitation is poor. They are an important cause of both food poisoning and traveler’s diarrhea. The discussion of Salmonella spp. may be generally divided into typhoid and nontyphoid species. Enteric (typhoid) fever is usually caused by S. typhi ; the most common nontyphoid species include Salmonella enteritidis, Salmonella typhimurium, Salmonella muenchen, Salmonella anatum, Salmonella paratyphi , and Salmonella give . Although historically enteric fever was considered much more severe than nontyphoid salmonellosis, more recent literature suggests a greater degree of overlap (both clinically and pathologically). The infective dose is relatively low (∼10 3 organisms may cause human disease). Patients with low gastric acidity and patients with AIDS have a greater risk for Salmonella infection and associated complications.
There are numerous manifestations of Salmonella infection, including an asymptomatic carrier state (often the organism is harbored in the gallbladder), a self-limited gastroenteritis, typhoid fever, and septicemia. Patients with typhoid (enteric) fever typically present with fever (which generally rises over several days), abdominal pain, headache, and occasionally initial constipation. Abdominal rash (“rose spots”), delirium, hepatosplenomegaly, and leukopenia are fairly common. The diarrhea, which begins in the second or third week of infection, is first watery but may progress to severe GI bleeding and perforation. Nontyphoid Salmonella spp. generally cause a milder, self-limited gastroenteritis with vomiting, nausea, fever, and watery diarrhea. Occasionally, these species cause bloody diarrhea or toxic megacolon.
Gram-negative enteric bacterium causing typhoid (enteric) fever or milder gastroenteritis
Any segment of colon; typhoidal form typically involves ileum, right colon, and appendix
Typhoidal form
Fever (rising over several days), abdominal pain, headache, and occasionally constipation
Abdominal rash (rose spots) and leukopenia
Diarrhea begins in the second or third week
Diarrhea is initially watery but may progress to severe gastrointestinal bleeding
Nontyphoidal form
Milder, self-limited gastroenteritis with vomiting, nausea, fever, and watery diarrhea
More clinical and pathologic overlap between the typhoidal and nontyphoidal forms than previously thought
Antibiotics, supportive care
In enteric fever, any anatomic segment of the alimentary tract may be involved, but the characteristic pathology is most prominent in the ileum, appendix, and right colon and is associated with Peyer’s patches. Grossly, the bowel wall is thickened, and raised nodules may be seen corresponding to hyperplastic Peyer’s patches. Aphthoid ulcers overlying Peyer’s patches, linear ulcers, discoid ulcers, or full-thickness ulceration and necrosis are common as disease progresses. Perforation and toxic megacolon may also be seen, as may suppurative mesenteric lymphadenitis. Occasionally, the mucosa is grossly normal or only mildly inflamed and edematous. Endoscopic findings in nontyphoid salmonellosis include mucosal redness, ulceration, and exudates, but the characteristic nodularity and marked edema are not generally seen.
Macrophages predominate in enteric fever ( Fig. 9.12A ). Peyer’s patches become hyperplastic, and then acute inflammation of the overlying epithelium is seen ( Fig. 9.12B ). Eventually, the lymphoid follicles are infiltrated and obliterated by macrophages. Necrosis begins in the Peyer’s patch and spreads to surrounding mucosa, which eventually ulcerates. The ulcers are typically deep, with the base at the muscularis propria. Typhoid fever may also show features more consistent with acute self-limited colitis, including prominent neutrophils, cryptitis, crypt abscesses, and overlying fibrinous exudate. Granulomas are occasionally seen. In nontyphoid salmonellosis, the pathologic features are those of acute self-limited colitis of any infectious cause. Occasionally, significant crypt distortion may be seen.
Typhoid
Characteristic pathology most prominent in ileum, appendix, and right colon
Markedly thickened bowel, raised nodules correspond to hyperplastic Peyer’s patches
Aphthoid ulcers overlying Peyer’s patches, linear ulcers, discoid ulcers, or full-thickness ulceration and necrosis are common
Perforation and toxic megacolon rarely seen
Suppurative mesenteric lymphadenitis may be present
Nontyphoid
Generally milder findings, including mucosal redness, ulceration, and exudates
Typhoid
Macrophage is the predominant inflammatory cell
Hyperplastic Peyer’s patches with overlying acute inflammation; eventually, frank ulceration begins in Peyer’s patch and spreads to surrounding mucosa
Lymphoid follicles are infiltrated and obliterated by macrophages
Neutrophils are usually limited to erosions overlying hyperplastic Peyer’s patches
Ulcers are typically very deep, with the base at the muscularis propria.
Rare granulomas
Nontyphoid
Features of acute self-limited colitis
Other bacterial infections ( Yersinia spp., Shigella spp.)
Crohn’s disease
Ulcerative colitis
Stool cultures followed by serologic typing are the gold standard for detection, and blood cultures may also be of use if the patient is septic.
The differential diagnosis of typhoid fever includes yersiniosis and other infectious processes, as well as Crohn’s disease, and there may be significant histologic overlap. Neutrophils and granulomas are often more prominent in the latter two diseases. The differential diagnosis of nontyphoid Salmonella infection also includes other causes of acute self-limited infectious colitis, as well as ulcerative colitis. In addition, Salmonella infection may complicate preexisting idiopathic IBD. Although significant crypt distortion has been reported in some cases of salmonellosis, it is likely to be more pronounced in ulcerative colitis. Clinical presentation and stool culture may be helpful in resolving the differential diagnosis.
Although the vast majority of Salmonella infections in developed countries resolve with antibiotics and supportive care, illness may progress to septicemia and death, particularly in older adults and very young people and in patients who are ill for other reasons. Delayed treatment is associated with higher mortality rates, and antibiotics are particularly important for neonates, older patients, immunocompromised persons, and patients with cardiac valve abnormalities or indwelling prostheses. Salmonella spp. are sensitive to several antibiotics, including ciprofloxacin, penicillins, and quinolones.
Shigella spp. are virulent, invasive, gram-negative bacilli that cause severe bloody diarrhea. They are a major cause of infectious diarrhea worldwide. Shigella dysenteriae is the most common species isolated, although Shigella sonnei and Shigella flexneri are increasingly reported in the United States. The infective dose is low (as few as 10–100 in S. dysenteriae type 1). Shigella spp. are generally ingested from water contaminated with feces, but person-to-person transmission is also possible through the fecal–oral route. Infants; young children; and malnourished, immunocompromised, and debilitated patients are most commonly affected in developed countries. Like salmonellosis, rare cases of chronic shigellosis may simulate IBD grossly and microscopically.
Symptoms include abdominal pain, fever, and watery diarrhea followed by bloody diarrhea. Chronic disease is rare. Perforation and hemolytic-uremic syndrome associated with Shigella infection have been rarely described. Most studies of mortality in shigellosis were performed in underdeveloped nations, and figures range from 2% to 10%. The mortality rate is significantly higher (>20%) if patients become septic.
Gram-negative bacterium causing severe bloody diarrhea
Colon, with the left colon most severely affected
Abdominal pain, fever
Watery diarrhea followed by bloody diarrhea
Chronic disease is rare (and may mimic ulcerative colitis and Crohn’s disease)
Perforation and hemolytic-uremic syndrome occasionally develop
Severity worse in debilitated or immunocompromised patients
Supportive care
Selected antibiotics because Shigella organisms have multidrug resistance
The large bowel is typically affected, with the left colon more severely involved. The mucosa is hemorrhagic, with exudates that may form pseudomembranes. Ulcerations may be present as well.
Early infection manifests as acute self-limited colitis with cryptitis, crypt abscesses (often superficial), and ulceration. Pseudomembranes similar to C. difficile infection may be seen, as may aphthoid ulcers similar to those of Crohn’s disease. As disease progresses, there is increased mucosal destruction with a mixed inflammatory infiltrate containing many neutrophils in the lamina propria. Marked architectural distortion to an extent that mimics idiopathic IBD is the best-described histologic pattern in mucosal biopsies, most likely because patients do not typically undergo colonoscopy early in the disease course.
Hemorrhagic mucosa, with exudates that may form pseudomembranes
Ulcerations may be present
Early infection
Acute self-limited colitis with cryptitis, crypt abscesses, ulceration
Pseudomembranes or aphthoid ulcers may be seen
Later infection
Increased mucosal destruction with a predominantly neutrophilic inflammatory infiltrate
Marked architectural distortion to an extent that mimics idiopathic inflammatory bowel disease
Other infections, especially Clostridioides difficile and enteroinvasive Escherichia coli
Inflammatory bowel disease
Stool culture requires rapid inoculation onto appropriate culture plates because Shigella organisms are fastidious and die quickly. Multiple cultures may be necessary. Stool cultures are more sensitive than rectal swabs. PCR, DNA probes, and serologic studies are also available.
The differential diagnosis of early shigellosis is primarily that of other infections, particularly EIEC and C. difficile . As disease progresses, it may be extremely difficult to distinguish shigellosis from Crohn’s disease or ulcerative colitis both endoscopically and histologically. Stool cultures and clinical presentation may be helpful in this instance.
Treatment includes supportive care with fluid and electrolyte replacement and antibiotics, particularly in children, people who are severely ill, and HIV-positive patients. Antibiotics lessen the mortality rate and shorten the duration of the illness. Most Shigella spp. have at least some degree of antibiotic resistance; trimethoprim–sulfamethoxazole, third-generation cephalosporins, and some fluoroquinolones are drugs of choice.
Campylobacter spp., particularly Campylobacter jejuni , are major causes of diarrhea worldwide. Campylobacter is the most common stool isolate identified in the United States. It is transmitted by the fecal–oral route; is found in contaminated meat, water, and milk; and is a common animal pathogen. C. jejuni is most commonly associated with gastroenteritis; Campylobacter fetus and the other less common species are more often seen in immunosuppressed patients and homosexual men. The importance of C. fetus may be underrecognized as a result of the difficulty of culturing it under conditions used for other Campylobacter strains. The infective dose is low (ingestion of as few as 500 organisms may cause disease), and invasion may occur.
Patients typically have fever, malaise, abdominal pain (often severe), and watery diarrhea, often bloody and with fecal leukocytes. Symptoms generally present within 1 to 5 days of exposure and last for 4 to 10 days. Relapse is common, although it is usually less severe than the original attack. Immunosuppressed patients have a higher incidence of symptomatic infection, and symptoms are more severe. Most infections are self-limited, especially in healthy patients. Of note, Guillain-Barré syndrome and reactive arthropathy are associated with Campylobacter infection.
Gram-negative bacterium
Most common stool isolate in United States
Colon
Fever, malaise, abdominal pain, watery diarrhea, often bloody and with fecal leukocytes
Symptoms generally present within 1 to 5 days of exposure and last for 4 to 10 days
Infection is generally self-limited, although relapse is frequent
Supportive care in most cases
Erythromycin in severe cases and in immunocompromised patients
Endoscopic findings include friable colonic mucosa with associated erythema and hemorrhage.
Histologic examination most frequently shows features of acute infectious or self-limited colitis, including cryptitis, crypt abscesses, surface epithelial damage, and a lymphoplasmacytic infiltrate in the lamina propria ( Fig. 9.13 ). Marked edema and superficial mucosal erosion with associated hemorrhage may be seen. Findings may be patchy. Although the mucosal architecture is usually well-preserved in Campylobacter infection, mild crypt distortion may occasionally be seen.
Culture and PCR on stool specimens are mainstays culture of Campylobacter detection. Preliminary diagnosis may be made by detection of organisms in fresh stool smears by dark-field microscopy. Rapid enzyme immunoassay tests have also been developed, but should be correlated with culture results.
The differential diagnosis primarily includes other forms of infectious enterocolitis that produce the acute self-limited colitis pattern; stool culture may be essential to resolving the differential diagnosis.
In most uncomplicated cases of Campylobacter infection, fluid and electrolyte replacement is the principal therapy. Antibiotics are not generally indicated unless there is high fever, severe or bloody diarrhea, or symptoms longer than 1 week or the patient is immunocompromised or septic. Erythromycin is the antibiotic of choice.
Yersinia enterocolitica and Yersinia pseudotuberculosis are the two Yersinia species pertinent to human GI disease. Yersinia is one of the most common causes of bacterial enteritis in Western and Northern Europe, and numerous cases have been documented in North America and Australia. Yersinia spp. may be found in many food products, including meats (particularly undercooked pork), dairy products, and water.
These gram-negative coccobacilli are causative agents in appendicitis, ileitis, colitis, and mesenteric lymphadenitis. In addition, they are responsible for many cases of isolated granulomatous appendicitis. Infection with either species may cause symptoms and signs of an acute abdomen, chronic abdominal pain, and diarrhea. Although yersiniosis is usually a self-limited process, chronic infections (including chronic colitis) and persistent abdominal pain have been well documented. Immunocompromised and debilitated patients, as well as patients on deferoxamine or with iron overload resulting from other causes, are at significant risk for serious disease.
Common cause of granulomatous appendicitis, enterocolitis in the United States and Europe
Ileum, appendix, and colon
Signs and symptoms of enterocolitis, acute appendicitis
Usually self-limiting; occasionally causes chronic disease
May have mesenteric adenopathy
Usually self-limiting
Severe cases and debilitated patients require antibiotics
Grossly, involved bowel has a thickened, edematous wall with nodular inflammatory masses centered around Peyer’s patches. Aphthoid and linear ulcers may be seen. Involved appendices are enlarged and mimic suppurative granulomatous appendicitis; perforation is often seen. Involved lymph nodes may show gross foci of necrosis.
Both suppurative and granulomatous patterns of inflammation may be seen, and a mixture of the two is common. GI infection with Y. pseudotuberculosis has characteristically been described as a granulomatous process with central microabscesses, almost always accompanied by mesenteric adenopathy. Infection with Y. enterocolitica has not typically been associated with discrete granulomas but has been characterized by hyperplastic Peyer’s patches with overlying ulceration and accompanying acute inflammation, hemorrhagic necrosis, and palisading histiocytes. Recent studies have shown that there is significant overlap between the histologic features of Y. enterocolitica and Y. pseudotuberculosis infection and that either species may show epithelioid granulomas ( Fig. 9.14A ), lymphoid hyperplasia (see Fig. 9.13B ), epithelioid granulomas with prominent lymphoid cuffing (see Fig. 9.13C ), transmural lymphoid aggregates, giant cells, mucosal ulceration, cryptitis, and concomitant lymph node involvement. Some cases show only nonspecific features of acute self-limited colitis.
Thickened, edematous wall with nodular inflammatory masses centered around Peyer’s patches
Aphthoid and linear ulcers may be seen
Involved appendices are enlarged and mimic typical suppurative appendicitis; perforation is frequent
Mesenteric lymph node involvement is common
Often mix of both suppurative and granulomatous patterns of inflammation
Lymphoid hyperplasia, epithelioid granulomas with prominent lymphoid cuffing and sometimes central abscesses, transmural lymphoid aggregates, giant cells, mucosal ulceration, and cryptitis
There is significant overlap between the histologic features of Yersinia enterocolitica and Yersinia pseudotuberculosis infection
Rare cases show only acute self-limited colitis
Primarily Crohn’s disease
Other infections such as Mycobacterium tuberculosis , Salmonella spp.
Cultures, serologic studies, and particularly PCR assays are the most useful diagnostic aids.
The major differential diagnoses of Yersinia infection include other similar infectious processes, particularly mycobacterial infection and salmonellosis. Acid-fast stains and culture results should help to distinguish mycobacterial infection; clinical features and the presence of granulomas may help to distinguish yersiniosis from salmonellosis.
Crohn’s disease and yersiniosis have a long and complicated relationship. Both may show similar histologic features, and, in fact, isolated granulomatous appendicitis has in the past frequently been interpreted as primary Crohn’s disease of the appendix. However, patients with granulomatous inflammation confined to the appendix rarely develop idiopathic IBD. Features that may favor Crohn’s disease include cobblestoning of mucosa and creeping fat grossly and changes of chronicity microscopically, including crypt distortion, thickening of the muscularis mucosa, and prominent neural hyperplasia. However, some cases are indistinguishable on histologic grounds alone.
Most cases of yersiniosis resolve spontaneously. Yersinia spp. are susceptible to many antibiotics, and therapy is recommended in patients with severe infections or bacteremia and in the context of immunocompromise or debilitation.
Vibrio cholerae and other members of the genus, Vibrio ( Vibrio parahaemolyticus , Vibrio vulnificus , Vibrio alginolyticus ), are gram-negative bacilli found in saltwater environments. Consequently, infection is usually acquired from consumption of contaminated raw or undercooked seafood. The illness known as cholera is caused by toxigenic serogroups of V. cholerae O1 and O139. Toxigenic V. cholerae has been responsible for several global pandemics of life-threatening gastroenteritis. The O75 and O141 serogroups produce less severe disease. In the United States, the Florida Gulf coast and Atlantic coast are the most common sources of infection.
Cholera is characterized by voluminous watery diarrhea, sometimes exceeding 1 L/hr, in the absence of pain or fever. The intestinal mucosal lining may also be shed, appearing as white flecks of tissue in so-called “rice water stool”. Vomiting is also common. The copious release of fluids can lead to severe dehydration and electrolyte imbalance.
Gram-negative bacillus found in saltwater environments
Small intestine
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