Overarching concepts in development


Genes in Development

Study of secondary oocytes before and after fertilization, and of the selection of embryos for implantation after in vitro fertilization, has identified the range of maternal genes ready for expression to ensure cleavage, morula and blastocyst formation. Embryonic genome activation occurs in the 4–8 cells stage ( ) when embryonic cells express polarity genes, initiating cell–cell interaction ( ); by 6 days post fertilization the hatched blastocyst is able to interact with maternal tissue. A simplistic but useful concept likens these early developmental processes to a series of binary choices (see Fig. 8.1 ). Two cell phenotypes, epithelial and non-epithelial cells, are specified during cleavage and early compaction within the zona pellucida. All the relevant genes required to maintain these cell shapes and behaviours are upregulated at these very early stages.

Three lineages are set up at this time with the specification of trophoblast, hypoblast (primitive endoderm) and epiblast. Cells subsequently respond locally to their environment, specifically to other cells that are positioned lateral and basal to them. In the mouse embryo, the genes operating at these early times are given in . The implanting blastocyst also expresses and secretes miRNAs (involved in post-translational gene expression) involved in interactions with the maternal endometrium which secretes similar molecules ( ): successful embryo–maternal cross-talk is vital for implantation.

Two related themes have emerged from experimental studies of development: the control of embryonic morphology has been highly conserved in evolution between vertebrates and invertebrates; this control involves families of genes coding for proteins that act as transcriptional regulators. Homeobox genes are believed to be responsible, at least in part, for the evolutionary origin of the embryonic body plan ( ) and for appropriate axial elongation of the embryo and limb specification ( ). Experimental studies of transgenic animals in which the homeobox genes have been knocked out provide some evidence of their function. However, because developmental processes permit significant recovery from insult, some of the outcomes cannot be directly interpreted as demonstrating the effect of such gene loss. Other gene families required for normal development include the T-box family (helix–loop–helix transcription factors and Sox genes) and the signalling factors transforming growth factor beta (TGF-β), bone morphogenetic proteins (BMPs), fibroblast growth factor family (FGF), the Wnt family and Hedgehog signalling molecules. A range of cell receptor molecules are also required. For details on individual members within this range of factors, see .

The successful culture of embryonic stem cells, the techniques of single-cell RNA-sequencing, analysis of all proteins expressed by early embryonic cells, the transcription factors they express, the molecules they secrete and those produced as metabolites, have generated extensive data on early genes and the control of sequential expression of genes specific to diverging cell phenotypes ( ).

Signalling between embryonic cells and tissues

Within the developing blastocyst, the position of cells relative to each other leads to epigenetic change. The acquisition of cell polarity is fundamental, because this specifies apical and basolateral domains, cell surface specializations, the positioning of intracellular organelles and cytoskeletal elements, and the position and nature of cell–cell junctions. The establishment cell junctional complexes between the outer, polarized, cells of the morula within the zona pellucida are the earliest embryonic cell interactions. The signals received by adjacent cells induces a change in their subsequent behaviour. Cellular signalling between cells and tissues occur via: direct cell–cell contact (gap junctions); cell adhesion molecules and their receptors; extracellular matrix molecules and their receptors; and growth factors and their receptors. The production of a basal lamina by epithelial cells (containing, e.g., laminin and fibronectin) and its attachment to underlying extracellular matrix molecules (collagen, proteoglycans and glycosaminoglycans) synthesized by mesenchyme cells constructs the tissues in which reciprocal signalling occurs ( Fig. 11.1 ). In most developing tissues an epithelium and its basal lamina are supported by underlying mesenchymal cells, each contributing to developmental interactions. However, there are a few sites where two epithelial layers, a special epithelium and an endothelium, generate a shared basement membrane to which both epithelial phenotypes contribute. This arrangement is seen between type-1 pneumocytes and endothelium in the developing lung alveoli; between the podocytes and endothelium in the glomerulus of the developing kidney; and between astrocyte end feet and pial-derived endothelium in the developing brain ( Fig. 11.2 ).

Fig. 11.1, The many ways by which mesenchyme cells could signal to epithelial cells. Precisely the same mechanisms can operate in reverse, i.e. epithelium to mesenchyme.

Fig. 11.2, Sites where specialized epithelial cells form shared basal laminae with endothelium.

Combinations of all of these signalling routes are involved in development and their perturbation may result in developmental aberration. The transient production of, e.g., gap junctions is seen as epithelial somites are formed; between neuroepithelial cells within rhombomeres; and in the tunica media of the outflow tract of the heart. Mutations of the genes that code for extracellular matrix molecules give rise to a number of congenital disorders, e.g. mutations in type I collagen produce osteogenesis imperfecta; mutations in type II collagen produce disorders of cartilage; and mutations in fibrillin are associated with Marfan syndrome

Growth factors are distinguished from extracellular matrix molecules. They can be delivered to, and act on, cells in a variety of ways, namely: endocrine, autocrine, paracrine, intracrine, juxtacrine or matricrine ( Fig. 11.3 ). Many growth factors are secreted in a latent form, e.g. associated with a propeptide (latency-associated peptide) in the case of transforming growth factor beta, or attached to a binding protein, in the case of insulin-like growth factors.

Fig. 11.3, In addition to the mechanisms described in Fig. 11.1 , cells may also communicate by the reception, production and secretion of growth factors. A typical embryonic mesenchyme cell may receive and produce growth factors in this way.

Other signalling mechanisms occurring between these cell arrangements include the transduction of the biomechanics of mesenchyme cell synthesized matrix. Stiffness of the matrix leads cells towards an osteoblastic developmental phenotype, whereas soft matrix leads to an adipocyte lineage ( ). Endogenous electrical fields are also believed to have a role in cell–cell communication and have been demonstrated in a range of amphibian embryos, and in vertebrate embryos during primitive streak ingression. Neuroepithelial cells are electrically coupled, regardless of their position relative to inter-rhombomeric boundaries.

The spatial and temporal distribution of a variety of cell adhesion molecules has been localized in the early embryo and displayed within the 3D tissue arrangement of embryos at a variety of stages (MGI mouse gene expression data search: eMAGE ). The temporal appearance of these molecules correlates with a variety of morphogenetic events that involve cell aggregation or disaggregation.

It is important to realize that while developmental studies on laboratory species and in vitro studies of animal tissues indicate the range of factors operating in embryos, the spatial and temporal expression of these factors in human embryos will be different. Figure 8.2 illustrates the temporal differences in external features between human and some animal species. Differences in heterochrony (the time at which genes are expressed and specific structures develop), are easily appreciated between mammals and marsupials, where marsupial embryos are born with facial and upper limb development well in advance of mammals of a similar developmental age ( ). Although not so extreme, differences in heterochrony are significant between human and mouse embryos and any extrapolation of animal developmental sequences to human development should be avoided. Somite generation frequency is 5 hours in humans and 2 hours in mice, and other processes, such as progenitor cell population expansion, have different time lines, e.g. generation of motor neurones takes 2–3 weeks in humans but a few days in mice ( ). The way in which embryonic cells and tissues count time is not yet clear, but analyses and correlation of specific heterochronic interspecies differences are now being investigated at the molecular level.

Induction and interactions

All cell signalling events form the basis of induction and are involved in cell–cell and tissue interactions. The sequential consequents of induction are described using specific terminology. The ability of a cell population (or tissue) to respond to an inductive signal is called competence and denotes the ability of the population to alter its initial behaviour as a result of the induction. After a cell population has been induced to develop along a certain pathway, it loses competence and becomes restricted . Once restricted, cells are set on a particular pathway of development and after a number of binary choices (further restrictions), they are said to be determined . Determined cells are programmed to follow a process of development that will lead to differentiation . The determined state is a heritable characteristic of cells and is the final step in restriction. Once a cell has become determined, it will progress to a differentiated phenotype if the environmental factors are suitable.

The process of determination and differentiation within embryonic cell populations is reflected by the ability of these populations to produce specific proteins. Primary proteins (colloquially termed housekeeping proteins) are considered essential for cellular metabolism, whereas proteins synthesized as cells become determined, and are therefore specific to the state of determination, are termed secondary proteins; e.g. liver and kidney cells produce arginase, but muscle cells do not. Fully differentiated cells produce tertiary proteins, that no other cell line can synthesize, e.g. haemoglobin in erythrocytes. The range of housekeeping, regulatory, and tissue-specific proteomes in adult cells is presented in the Human Protein Atlas ( www.proteinatlas.org ).

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