Cancer and the science of innate immunity


Summary of key facts

  • The innate immune system is the host’s first line of immune defense against challenges of the environment.

  • The innate immune system response is a nonrestricted, rapid response.

  • Innate immunity is required for the establishment of adaptive immunity, or immune memory.

  • Cellular components comprising the innate system include monocytes, macrophages, dendritic cells, and granulocytic cell types such as neutrophils, mast cells, eosinophils, and basophils.

  • Myeloid cells are phenotypically plastic, modulated by multiple systemic signals associated with inflammation.

  • In a cancer setting, myeloid cells can either promote tumor growth or have antitumor functions.

  • Chronic inflammation associated with cancer results in emergency myelopoiesis and emergence of myeloid precursors from the bone marrow and other extramedullary sites.

  • Tumors, tumor-produced cytokines and chemokines, tumor-associated leukocytes, restricted nutrient supply, and oxidation of lipids alter the phenotype and function of myeloid cells entering the tumor microenvironment.

  • Therapies aimed at genetically or epigenetically reprogramming myeloid cells in vivo or in vitro have shown promise as novel immune therapies.

Introduction

Innate immune cells are extraordinarily sensitive to the environment of the tissues in which they reside, phenotypically and functionally adjusting according to the chemokine and cytokine milieu, changes in tissue metabolism, and changes in the tissue architecture. Because of their functional adaptability, innate immune cells are central for the protection and maintenance of tissue homeostasis in response to inflammation, infectious disease, and cancer. This chapter will highlight critical developmental, transcriptional, and functional aspects of the innate immune system and how each of these pathways can be coopted by or contribute to cancer initiation, tumor growth and metastasis, antitumor immunity, and therapy response. Finally, this chapter will highlight therapeutic targets within the innate immune system that have shown promise as cancer therapies.

The cellular components of the innate immune response

The immune system is divided into two branches, the innate immune system (nonrestricted rapid response) and the adaptive immune system (acquired cellular and humoral response). Innate immune cells comprise macrophages, monocytes, dendritic cells, and other myeloid- and lymphocyte-derived subsets that initiate and/or regulate host immune responses so that the adaptive arm of the immune system can eventually be triggered. Innate immune cells are not restricted by antigen and are functionally attenuated through signaling via immune receptors located on the surface or cytoplasm of the cells. These receptors recognize chemokine and cytokine signals, lipids and other signaling molecules, pathogen-associated molecular patterns (PAMPs), and dead and dying cells (damage-associated molecular patterns or DAMPs). To understand how the innate immune system functions in response to cancer, we will first define elements of innate immunity that are relevant to cancer, with an emphasis on myeloid subsets, given their significant contribution to tumor initiation, growth, immune evasion, and metastasis. Understanding the origins and functional potential of myeloid cells in the context of homeostatic or acute inflammatory settings will provide insight into the role of myeloid cells during cancer.

Monocytes

Monocytes are mononuclear-derived cell subsets that reside within the bone marrow, patrolling the blood and tissues for pathogens or abnormal cells. Monocytes were originally considered a short-lived precursor to tissue macrophages ; however, with the advent of more robust single-cell analysis technologies, fate mapping, and novel investigational model systems to study myeloid ontogeny and function, the origins and contribution of monocytes to tissue inflammation and homeostasis have become more nuanced. Indeed, monocytes do give rise to macrophages during specific inflammatory contexts. However, unlike macrophages, monocytes do not have the capacity for self-renewal, nor are they long-lived, like tissue macrophages derived from embryonic precursors that are maintained into adulthood. Studies have indicated that monocytes can give rise to dendritic cells , and demonstrated that monocytes are able to function as an individual and transient effector populations. For example, monocytes recruited to the liver by the proangiogenic factor vascular endothelial growth factor (VEGF) were educated to remodel the tissue vasculature without differentiating into macrophages. Monocytes recruited into skin and lungs did not terminally differentiate into macrophages or dendritic cells but instead participated in steady-state tissue surveillance and transport of antigen to draining lymph nodes via the lymphatics. Another study highlighted a critical role for monocytes in the expansion of brown adipose tissue. These studies have challenged the dogma that monocytes solely function to repopulate macrophage and dendritic cell pools but instead demonstrate that in multiple inflammatory contexts monocytes contribute to angiogenesis, tissue remodeling, and antigen trafficking to lymph nodes, all of which are pathways involved in cancer initiation and progression. The relevance and contribution of monocytes to cancer progression will be highlighted in the next section.

Monocyte ontogeny

In mice, monocytes consist of at least two functionally and phenotypically distinct subsets. Classic monocytes, or inflammatory monocytes, are Ly6C high (GR-1 + ) with proinflammatory properties, migrating to injured , or infected tissues from the blood or bone marrow via signaling through chemokine receptor CCR2. Nonclassical Ly6C neg (GR-1 neg ), or patrolling, monocytes reside in the vasculature and crawl along the luminal vessel surfaces of endothelial cells to surveil tissues during the resolution of inflammation. Ly6C neg monocytes enter into tissues during the latter phase of infection, via CX3CR1 signaling, exerting a tissue repair immune regulatory program. Ly6C hi monocytes have a short-lived half-life of 20 hours but constitute the steady-state precursors to the blood-residing Ly6C neg migratory pool such that the abundance of Ly6C hi monocytes dictates the pool of Ly6C neg progeny. Monocytes are thought to be derived from the common monocyte progenitor (cMoP), a myeloid precursor population found in the bone marrow in mice, and phenotypically defined as CLEC12A hi CD64 hi subsets in humans. Progenitor populations were originally thought to derive in a hierarchical progression from common myeloid progenitor (CMP)- granulocyte-monocyte progenitor (GMP)- monocyte-macrophage dendritic cell progenitor (MDP)-cMoP-monocyte. However, it has been demonstrated that under specific inflammatory contexts a bifurcation in the pathway occurred whereby CMP arose independently from MDP into GMP-derived neutrophil-like monocytes whereas MDP differentiated into monocyte-derived DCs. Thus, distinct ontogenies likely underlie observed functional heterogeneity in monocyte populations. Besides originating from the bone marrow, large pools of monocytes reside in the spleen and lungs, where they are maintained and are recruited en masse in response to inflammation, injury, or other systemic insults.

Most studies investigating monocyte origins and deployment throughout the body have used murine models. Human counterparts exist and have both similar and distinct functional attributes compared with their murine counterparts, which are outlined in Table 4.1 . In humans, monocytes represent 10% of the nucleated cells in the blood, whereas in mice monocytes represent 4% of nucleated blood cells. In humans, monocytes are defined based on CD14 and CD16 expression. CD14 ++ CD16 monocytes are more similar in function and phenotype to Ly6C hi monocytes in mice, including having high expression of CCR2 and CD115 while also having lower CD16 expression levels. On the other hand, CD14 + CD16 + monocytes also appear to have similar attributes to Ly6C neg monocytes, including having elevated CX3CR1 expression. Despite these similarities, important differences between murine and human monocytes have been identified. For example, comprehensive transcriptional and flow cytometric profiling of murine monocytes and their human equivalents revealed that murine monocytes had high PPARγ expression signatures, whereas human monocytes had opposed patterns of surface receptors responsible for recognition and uptake of apoptotic cells and phagocytosis.

TABLE 4.1 ■
Monocyte Subsets in Mice and Humans
Monocyte Subset Species Classic Markers Recruitment Phenotype References
Classic monocyte (inflammatory) Mouse CD115 + CD11b + Ly6Chi CCR2 + CX3CR1lo
  • Recruited early during inflammation

  • Egress from bone marrow to CCL2

  • Short-lived

  • Proinflammatory

  • Steady-state precursor to nonclassic monocytes

, , , ,
Human CD14 ++ CD16 CD115 + CCR2 + CX3CR1lo Proinflammatory , ,
Nonclassic (patrolling) Mouse CD11b + Ly6Clo CCR2 CX3CRhi
  • Patrol vessels

  • Enter into tissues to CXCR3 ligands

  • Long-lived

  • Tissue homeostasis/repair

  • Immune regulatory

  • PPAR gamma signature

, , , ,
Human CD14 + CD16 + CD115 + CCR2 CX3CR1hi
  • Immune regulatory

  • Tissue homeostasis/repair

,

Monocyte function: Differentiation during homeostasis and inflammation

Monocytes are recruited in waves, where short-lived Ly6C hi monocytes contribute to early inflammation and Ly6C neg monocytes specialize in tissue repair and immune regulation. Ly6C neg monocytes are longer-lived, with a half-life of up to 2 weeks. Upon entering tissues, and depending on the signals present within a given tissue environment, monocytes will either act as terminally differentiated effectors, as outlined previously, or differentiate into tissue macrophage and dendritic cell populations.

In steady-state conditions, little evidence exists to indicate that classic Ly6C hi monocytes contribute significantly to the pool of tissue-resident macrophages. , , In the context of pathologic inflammation, Ly6C hi monocytes repopulate both tissue-resident macrophage and dendritic cell pools (for in-depth review, see Wynn et al. ). One interesting exception to this paradigm is the lamina propria myeloid cells residing in the intestines. Using macrophage depleted conditions, monocyte fate mapping, adoptive transfer of monocytes, and parabiosis experiments, Varol et al. and Bogunovic et al. both demonstrated that circulating inflammatory Ly6C hi monocytes replenish the pool of immune-regulatory CX3CR1 + macrophages but not of CD103 + lamina propria migratory dendritic cell subsets. , This process occurs during homeostasis and is thought to differ from other steady-state macrophage pools because of the low-level tonic signaling by the commensal microbiota. Follow-up studies demonstrated that signals from the commensal microbiota were essential for monocyte-driven repopulation of luminal macrophages, because antibiotic treatment significantly depleted monocyte recruitment into the intestines, whereas germ-free mice exhibited a significant reduction in luminal macrophage levels. Thus, the chronic signals derived by the gut microbiota were central for continued recruitment of Ly6C hi monocytes into the lamina propria. During acute inflammation, such as during colitis, Ly6C hi monocytes respond to bacterial products and give rise to proinflammatory effectors that eventually differentiate into migratory antigen-presenting dendritic cell subsets. On the other hand, noninflammatory patrolling monocytes in both mice and humans directly give rise to migratory dendritic cell subsets in homeostatic settings. This occurs in the absence of acute inflammation, where Ly6C hi monocytes recirculate back to the bone marrow and are converted into Ly6C neg populations that replenish depleted dendritic cell populations in mucosal, but not splenic, tissues.

Monocytes are versatile cell types and, similar to other myeloid-derived counterparts, exhibit sensitivity to the environment in which they reside. Functionally, monocytes exhibit plasticity and have a broad functional repertoire and differentiation potential that is dictated by the signals present in the tissues that they are recruited into. These properties endow monocytes with the potential to elicit robust inflammatory responses or participate in tissue remodeling and repair. Understanding the basis for monocyte fate and function in specific inflammatory contexts will be important for targeting these functionally diverse subsets for the treatment of various diseases, including cancer.

Macrophages

Macrophages, in Greek meaning “the big eater,” were originally identified as large phagocytic cells of the myeloid lineage having a critical role in maintaining tissue homeostasis and protection during sterile insults or disease. Macrophages are highly plastic phagocytic cells that have tremendous sensitivity to signals within their microenvironment, endowing them with broad functional diversity in terms of cytokines, chemokines, and other effector molecules. Macrophages occupy all tissues of the body, many of which are seeded into tissues during embryogenesis from the yolk sac and fetal liver. In most circumstances, tissue macrophages are long-lived and self-renew to maintain tissue residency throughout adulthood. Because of these properties, there is a significant effort to define the signaling pathways associated with macrophage recruitment and function within tumor-associated tissues and the tumor itself. To appreciate how macrophages function in the context of tumor initiation, metastasis, antitumor immunity and therapy response, we will first review macrophage ontogeny and function during homeostasis and acute inflammation, summarized in Fig. 4.1 .

Fig. 4.1, Multispectral model of macrophage activation.

Macrophage ontogeny

Macrophages populate tissues throughout the body in distinct waves during embryogenesis, with inputs from the yolk sac, fetal liver hematopoietic stem cells, or bone marrow. The first wave originates from the yolk sac, where erythroid–myeloid precursors either populate tissues directly or establish a niche of embryonic hematopoietic stem cells in the fetal liver. Monocytes originating from the fetal liver constitute the second wave of macrophage seeding into embryonic tissues. With the exception of the intestinal and cardiac macrophages, the latter of which are renewed by adult monocytes during aging, tissue macrophages are able to self-renew into adulthood. Brain microglia are the only population of tissue macrophages seeded exclusively by yolk sac embryonic precursors, whereas heart macrophages, liver Kupfer cells, and skin Langerhans cells are seeded by both the yolk sac and fetal liver. , Alveolar macrophages, kidney macrophages, and red-pulp macrophages are seeded only by fetal liver monocytes. ,

Macrophage cellular functions: Tissue-specific functions and the spectrum model of activation

Macrophages are considered professional phagocytes, a cell that specializes in phagocytosis, deriving from the Greek words phago (to devour) and cytos (cell). Phagocytosis is a cellular process in which innate immune cells engulf and ingest large materials (greater than 0.5 μm in size) such as dead and dying cells, pathogens, or other particulate materials. Phagocytosis by macrophages and other professional phagocytes is essential for immune homeostasis and host defense, a process that was first described by Elie Metchnikoff, who received a Nobel Prize for his work in 1908 (for in-depth review, see Gordon ). Phagocytosis occurs in multiple phases beginning with sensing of the particle to be ingested through receptors on the cell surface, , internalization of the particle through the plasma membrane and into a distinct cellular compartment termed the phagosome , and fusion of the phagosome with lysosomes, an organelle responsible for degradation of phagocytosed macromolecules.

Tissue-resident macrophages exhibit multiple specialized functions for distinct tissue compartments and are identified by specific transcription factors that are induced in response to the tissue microenvironment. Several functionally nonredundant macrophage populations reside in the spleen. Macrophages residing in the red pulp are regulated by the transcription factor PU.1, enabling localization to red pulp for phagocytosis of damaged and dying red blood cells scavenging released iron to maintain iron homeostasis. On the other hand, marginal zone splenic macrophages are dependent on LXRa signaling, where they specialize in the clearance of apoptotic cells while also regulating selective uptake of apoptotic cells by CD8a dendritic cells, a subset in the spleen responsible for regulating autoreactivity to self-antigens. Alveolar macrophages express the transcription factor B lymphoid transcription repressor BTB and CNC homology 2 (Bach2), which enables lipid handling and clearance of surfactant in the alveolar spaces of the lungs. They also facilitate gas exchange and prevent against hypoxia during infection.

Although there are multiple additional examples of tissue specification for macrophages, these studies underscore that macrophage function and phenotype are dictated by the signals present within the tissues that they reside. The advent of single-cell technologies to measure differences in gene expression, protein production, and chromatin regulation have enabled discovery of specific signaling pathways contributing to macrophage heterogeneity during health and disease. This concept is central to the heterogeneity of macrophages observed in disease settings such as cancer. Through transcriptional and epigenetic profiling of tissue-resident macrophages, Lavin et al. identified that aside from lineage-specific transcription factors, tissue-specific microenvironmental signals regulated macrophage identity and function through the induction of core transcription factors and specific chromatin modifications. Tissue signals were so robust that transplanted macrophage precursors or mature macrophages were effectively epigenetically “reprogrammed” when transferred into new tissue environments, exemplifying macrophage functional and transcriptional plasticity. Macrophage plasticity and the ability to be reprogrammed in response to changes in the microenvironment are key considerations when developing anticancer therapies, as will be outlined in the following.

The conceptual framework of macrophage activation has long maintained that macrophages can be polarized into two opposing states: M1, or classically activated inflammatory macrophages, and M2, or alternatively activated immune regulatory macrophages. Studies evaluating macrophage response to acute infection, allergies, obesity, and asthma supported the paradigm that macrophages existed in one of two polarized states. However, this model did not account for the specialized functions of tissue macrophages, macrophages during sterile inflammation and tissue repair, and resolution of inflammation, nor did it encompass macrophage functional changes during chronic and complex disease states such as autoimmunity, chronic infection, and cancer. This paradigm has evolved coincident with the work related to macrophage ontogeny, with elegant studies demonstrating that macrophages have a broad functional repertoire with multiple, distinct, activation programs. Using ex vivo–derived human macrophages, Xue et al. differentiated macrophages in 29 distinct conditions ranging from stimuli associated with M1 and M2 activation axis to stimuli associated with free fatty acids, high-density lipoprotein, or combinations associated with chronic inflammation. Using transcriptomics and network analysis, it was found that in conditions diverging from the classical M1 and M2 paradigm, macrophages had a broad spectrum of activation signatures. These studies support the framework that macrophage activation is multidimensional, where macrophages receive input from tissue environments and external stimuli such as sterile insult, pathogens, or cancer, culminating in a broad range of activation phenotypes. The multispectral model is highlighted in Fig. 4.1 .

Dendritic cells

Dendritic cells were first discovered by Ralph Steinman and Zanvil Cohn in 1973, with Ralph Steinman receiving the Nobel Prize in Physiology or Medicine for this discovery in 2011. Dendritic cells were first identified as a unique cell subset, distinct from macrophages, based upon their extensively branched dendrites, multiple mitochondria, motility, lack of robust phagocytic activity compared with macrophages, and a robust ability to activate T cells. , After years of skepticism, it is now well accepted that dendritic cells are instrumental for inducing adaptive immune responses to self- and foreign antigens, highlighting their critical role in the initiation of tolerance and protective immunity. Macrophages are professional phagocytes, and dendritic cells are considered professional antigen-presenting cells, a sentinel of immune activation and host memory responses. Given these attributes, much work has gone toward understanding dendritic cells to therapeutically enhance adaptive immune responses against pathogens and tumors and to suppress responses during autoimmunity.

Most subsets of dendritic cells, with the exception of Langerhans cells, are constantly replenished from hematopoietic precursors in the bone marrow. Dendritic cells are subdivided into three subsets based upon lineage precursors, expression of core transcription factors, and functional attributes (summarized in Fig. 4.2 ). Subsets of dendritic cells are as follows: classic dendritic cells (cDCs), plasmacytoid DC (pDCs), and monocytic DCs (moDC).

Fig. 4.2, Dendritic cell development and classification in human and mice.

cDCs are the most well-characterized subsets, given their ability to activate CD4 and CD8 T cells. cDCs derive from the common dendritic cell progenitor (CDP), with precursors entering into the lymph nodes to disperse via high endothelial venules where they form an integrated network of DCs. cDCs are subdivided further based upon distinct developmental pathways, expression of core transcription factors, and functional attributes. cDCs are considered a heterogenous population, but the two most well-characterized subsets are cDC1 and cDC2. cDC1 express XCR1 and CLEC9A and can cross-present antigen to CD8 T cells, having an outsized role during antitumor immunity in both mice and humans, as detailed later. cDC2 are more heterogenous and have been identified to represent multiple distinct and heterogenous transcriptional programs (for in-depth review, see Chen et al. ). cDC2 typically activate CD4 T cells and, depending on the subset, can be proinflammatory or immune regulatory. A third cDC subset has been identified in humans, termed cDC3, which primes a subset of tissue-homing CD8+ T cells expressing CD103. ,

Plasmacytoid dendritic cells (pDCs) produce large amounts of type I interferon in response to viral infection or inflammation. The origins of pDCs are not as well-defined compared with their classical counterparts. Original studies demonstrated that pDCs can be derived from CDP. However, studies tracking progenitor subsets from the lymphoid lineage using the expression of yellow fluorescent protein (YFP) discovered that a majority of pDCs in the thymus and spleen were marked by YFP expression, indicating that the YFP-expressing pDCs derived from lymphoid progeintors. Dress et al. explored this paradigm further by combining single-cell mRNA sequencing with in vivo fate mapping and in vitro single cell–based clonal assays to demonstrate that pDCs arose from a subset of common lymphoid-like progenitors, indicating that pDCs are a distinct lymphoid-derived dendritic cell subset. Monocyte-derived DCs also do not arise from CDP but instead form monocytic precursors in inflamed settings.

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